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Sample Preparation Equipment

Preparation Equipment Specialist:
Descriptions
Equipment



Descriptions


The specimen preparation equipment in both the Shepard Labs and BSBE facilities allows samples to be prepared for microscopy from a wide variety of materials and biological sources.  Techniques include cutting, polishing, ion-milling, chemical etching, carbon and metal coating, ultra-rapid freezing, freeze-fracture, and cryo-embedding.  A variety of inspection microscopes are also available to monitor and record the progress of the specimen preparation process.

Equipment


Buehler IsoCut Diamond Saw   (12 Shepard Labs)
Perimeter outside cutting saw removes slices from bulk material >= 0.5 mm thick.

Applications:


Buehler Minimet Polisher/Grinder   (12 Shepard Labs)
The Minimet polisher/grinder may be used to prepare a wide range of specimen samples through fine grinding, rough polishing, and final polishing.


VCR Corer Model V7100   (12 Shepard Labs)
This precision coring tool, is an accurate, adjustable-speed, table-top drill press.  It is equipped with a soft metal core drill and a diamond impregnated core drill which will produce 3 mm diameter specimens.


Metallographic Polishing Wheels   (12 Shepard Labs)
The 8" polishing wheels can be used with tripod polishers for grinding and polishing operations to produce scratch-free planar surfaces or electron-transparent "wedge" specimens (tripod polishing).

Applications:


VCR Dimpler   (12 Shepard Labs)
Dimpling produces an ultra-thin region necessary for successful, artifact-free ion thinning yet maintains a robust peripheral thickness that helps prevent breakage while handling the specimen.  Prethinning with the dimpler also reduces specimen preparation time in an ion mill from 20-25 hours to as little as five minutes.

Application:


Ion Mills   (12 Shepard Labs)
The Gatan Duo Mill is an ion milling system for preparing high quality TEM specimens.  Two independent milling stations are mounted on a single high-speed turbomolecular-pumped vacuum system.  Used for argon ion milling at voltages from 1 kV to 10 kV.  The angle of incidence of the ions may be continuously varied from 12 to 45 degrees.  Automatic laser termination is available.  Liquid-nitrogen cooled stage available on one port.

VCR Ion Mill is available with low-angle ion-milling capability.

Applications:


Gatan Precision Ion Polishing System (PIPS)   (12 Shepard Labs)
The PIPS is a precision polisher which works by ion milling at a very low, but variable, angle.  Low sputtering angles have the advantage of minimizing radiation damage and beam heating while at the same time producing specimens having exceptionally large, clean electron transparent areas, and a minimum of differential milling-rate artifacts.
Applications:


Tenupol-3 Electro-Polisher   (12 Shepard Labs)
The Tenupol-3 is an automatic instrument for electrolytic thinning of specimens for TEM examination where the thickness of the specimens must correspond to or be smaller than the grain size of the examined material.
Applications:


Reichert UltraCut S Ultramicrotomes
With Model FC-S Cryo Attachments
  (12 Shepard Labs and BSBE Facility)
The Reichert UltraCut S is a state-of-the-art ultramicrotome system featuring user-friendly controls, precise knife and sample movements, excellent and highly versatile lighting, and a variety of sample holder options for semi-thin and ultra-thin sectioning of resin-embedded samples.

The Model FC S is a cryo-ultramicrotome system specifically designed for routine ultrathin frozen sectioning when coupled to the UltraCut S ultramicrotome.  A cryo-chamber surrounding the sectioning area is cooled continuously by liquid nitrogen pumped from a Dewar flask.  The automatic pumping system ensures a stable low temperature environment around the frozen specimen.  The temperature of the knife, specimen, and cryo-chamber atmosphere can be individually controlled and then continuously regulated by the cryo control unit, which also regulates the liquid nitrogen pumping system.  At any time during sectioning, the operator can monitor these temperatures on the display.

The Reichert UltraCut S in the Shepherd Labs Facility is normally configured for cryo-ultramicrotomy (coupled to FC S unit) while the UltraCut S in the BSBE Facility is normally configured for room temperature sectioning.  Its FC S unit can be added as needed.

Applications:
  • Polymer sections for TEM
  • Biological specimens
  • Materials science specimens

Ultramicrotomy Services

Ultrathin sectioning (using diamond knife) and subsequent staining of embedded biological specimens, and preparing formvar support films, is available on a fee for service basis.  Diamond knives and other specialized tools and equipment ARE NOT provided by the BSBE facility for use by others.
  Reichert UltraCut S photo


Tousimis Model 780A Critical-Point Dryer   (BSBE Facility)
The Tousimis Critical Point Drying System is used to complete the dehydration of biological specimens and other materials from their native hydrated states prior to observation in the SEM.  Water is removed from the samples by passing them through a series of increasingly concentrated ethanol solutions, and the pure ethanol-saturated samples are then transferred to the system's high-pressure chamber where the ethanol is replaced by liquid carbon dioxide.  The chamber temperature is then raised to bring the carbon dioxide saturated samples to the CO2 critical point; that being the combination of temperature and pressure where the phase boundary between the liquid and gas phases disappears and the two phases coexist.  The chamber pressure is then vented very slowly, allowing the CO2 to leave the sample in the gas phase, but without surface tension effects that would otherwise cause damage to sample ultrastructure.  This semi-automated system is reliable and easy to operate.

Applications:
  • Biological specimens (bulk tissues, cell cultures, single cells)

Operating Instructions  (pdf)
  Tousimis Model 780A photo


LKB Knifemaker Model 7801 B   (Shepherd Labs and BSBE Facility)
The LKB Knifemaker enables the efficient production of economical glass knives for ultramicrotomy, from glass strips of either 25 or 38 mm width.


Balzers MED 010 Turbo Mini Deposition System   (BSBE Facility)
The MED 010 mini deposition system is a compact turbo-pumped vacuum deposition system.  It accepts the Gatan Model 626-DH Cryotransfer System cold stages for magnetron sputter coating of SEM samples with Pt, Cr, or W at ambient to ultra-low temperatures.  As currently configured, it also serves to evacuate the Gatan cold stage dewars during regeneration of their molecular sieves.


Denton DV-502A High Vacuum Deposition System   (BSBE Facility)
The DV-502A system consists of a conventional diffusion pump and oil-filled rotary pump vacuum system with a 12" bell jar chamber and a variety of electrode assemblies and feedthroughs to permit:
  1. Conventional "cool" magnetron-type sputter coating for SEM using gold-palladium or pure gold targets.  Under standard conditions (15 millitorr argon) the coating rate is approximately 10 nm / 30 seconds.
  2. Thermal evaporation of carbon to provide conductivity and beam damage protection for thin sectioned materials to be observed in the TEM., and to produce pure carbon support membranes for "whole-mount" TEM samples prior to negative staining.
  3. High-temperature "bakeout" of thin molybdenum apertures from SEMs and TEMs to remove hydrocarbon contaminants.
  4. "Glow-discharge" treatment of formvar, parlodion, or similar thin film plastic specimen supports to reduce hydrophobicity and enable surface wetting in negative stain and similar sample preparations.
  Denton DV-502A High Vacuum photo


VCR High Resolution Indirect Ion-Beam Sputtering System   (BSBE Facility)
The VCR sputtering system deposits extremely thin (~1-2 nm) and fine-grained ~1-4 nm) coatings of platinum, tungsten, carbon, etc. coatings to samples for SEM observation.  The target material is bombarded by a beam of ionized argon gas accelerated to approximately 9 kV.  The ejected target material then impacts the sample surface which is rotated through a variety of angles during the coating process.  The coating accumulates at approximately 0.1 to 0.2 nm per minute and can be carefully controlled and easily reproduced.

Operating Instructions  (pdf)
  VCR High Resolution Indirect Ion-Beam Sputtering System photo


Balzers HPM 010 High Pressure Freezer   (BSBE Facility)
The HPM 010 High Pressure Freezer allows specimens up to 0.6 mm thick, with a total volume of ~ 1 mm3, to be vitrified (producing microcrystalline or amorphous ice) at the relatively slow rate of freezing, compared to plunge or slam methods, of 200°C / second. Samples are vitrified in ~ 30-50 milliseconds by exposing them to jets of liquid nitrogen at 2100 Bar for ~ 500 milliseconds.  The method is based on an entirely physical phenomenon that lowers the freezing point of water.  Cells and tissues may be frozen without requiring the addition of chemical cryoprotectants which can introduce artifacts.  Physical immobilization of all cell components by ultrarapid freezing may be vastly superior to conventional chemical fixation at room temperature because diffusion of various chemical fixatives through cells and tissues may take minutes to hours, and not all cell components will react with fixatives at equal rates, or to equal degrees.  Thus cell components may be lost or rearranged.  The method may be used to prepare samples for cryoSEM, for subsequent preparation of freeze-fracture replicas for TEM, and for freeze-substitution, in which fixatives in organic solvents are introduced into the cryoimmobilized samples while still at low temperature, combining chemical fixation and removal of water while preventing collapse and shrinkage of cell ultrastructure.  The high pressure freezing method has also been successfully applied to non-biological materials such as latex emulsions and inks for cryoSEM examination.

The instrument is relatively easy to use, reliable, and robust.  A variety of specimen carriers are available to permit freezing of specimens ranging from ~ 50 to 600 microns in thickness.
  HPM 010 High Pressure Freezer photo


Balzers FSU 010 Freeze Substitution Unit   (BSBE Facility)
The FSU 010 Freeze Substitution Unit automates the process of dehydration, chemical fixation, and even resin infiltration and polymerization of cryoimmobilized samples at low temperatures.  Timers control the duration of the various process steps, while temperatures are monitored and controlled, from 0?C to -99C, by adjustment of LN2 supply and heaters.  Processes can be programmed to run for several days, with individual steps adjustable in units of hours, minutes, or seconds.

The unit is equipped with a number of specimen holder racks and supports, and a short-wave ultraviolet lamp unit is available for polymerization of low-temperature resins if a complete low-temperature sample preparation process is required.


Bal-Tec BAF 060 Freeze-Fracture System   (BSBE Facility)
The BAF 060 Freeze-Fracture System can be used to produce high resolution metal replicas of cryoimmobilized emulsions, liquids, gels, cell suspensions, and tissues, for either TEM or cryoSEM applications.  Samples may be fractured by using double replication specimen tables or cyro-microtomes.  Partial freeze drying or complete freeze drying can also be carried out, and the samples then coated with metal (platinum/carbon; tantalum/tungsten/carbon; platinum/iridium /carbon).  Metal evaporation / coating can be done at angles from 0 to 90.  "DARS" (Double Axis Rotary Shadowing) is also possible.  The evaporation processes are controlled by a quartz crystal thin film monitor.  The two stage vacuum system consisting of a turbomolecular pump combined with a membrane pump assures oil-free vacuum load-lock and sample chamber environments.  All specimen tables, both electron beam guns, and the knife can be exchanged through one rough vacuum load lock to maintain high vacuum in the main chamber.  The vacuum system's control system is designed to prevent the operator from making errors during transfer and processing, and the quick-lock manipulator with integrated movement guide allows error-free and quick specimen transfer.   BAF 060 Freeze-Fracture System photo


Pelco CPD2 Critical Point Dryer
Wet specimens are processed through critical point drying with minimal artifacts caused by surface tension effects.
Prepares biological specimens and other wet materials for electron microscopy.


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